miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Alvinella pompejana, Helobdella robusta, Lumbricus rubellus, Tubifex tubifex



ABOUT THIS RECORD

ID: MNEST007468
species: Alvinella pompejana
miRNA family: miR-4116
source: miRNEST

Taxonomy by NCBI:
Alvinella pompejana Alvinella Alvinellidae Terebellida Scolecida Polychaeta Annelida Annelida/Echiura/Pogonophora group Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGGAAAGATGGGATTTATTT

miRNA*
ATGCTTCCGTCGTCTCCCA

mismatches: 2
bulges: 2

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pre-miRNA
TTTTTTTCGGGGAAAGATGGGATTTATTTCGATATTAGGAGGTGGAAGTGGATCATCAAAGTGCCATTATCGAGGTGCTTTATTATGGGATTAAATAGGT
CAGAGGTGGGATCTTAATGCCACTTTCTCATGAGCAGATGCTTCCGTCGTCTCCCATCAGA


dot-bracket secondary structure
........(((((..(((((((..(((((...(((.(((((((((....(((((...((((((((........)))))))).((((..((((.....)))
)....))))))))).....))))))))).)))...))))).))))))).))))).......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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